As long as the two parallel strings are expecting the same charging voltages, its totaly possible to charge strings with differing capacity from the same charge source. I do this in my house and rv daily.
It is somewhat dependent on it being lifepo4 vs some other chemistry like lead acid. This is because lifepo4 has such low internal resistance that the resistance of the wiring between each battery and the charge source ends up being a much bigger factor in which batteries receive more of the charge current vs the difference in resistance between the larger and smaller capacity batteries.
So, conceptually its fine, but it is somewhat possible to booger the idea in execution depending on how you wire it. If I were to execute this plan i personally would wire each larger battery into parallel with the smaller (starter) battery individually through some smallish wire such as 12ga before wiring the 3 pairs into series. Your main positive and negatives and the large wires between each 12v pair would hook to the terminals of the smaller starting batteries, and the larger capacity batteries with smaller amp BMS’s would only hook to the starter batteries through the small connecting wires which would add enough resistance to keep them from flowing enough current to engage their BMS overcurrent protection features.
Any time they werent under a heavy load, or when charging, the resistance would still be low enough that they would ‘distribute’ the charge adequately well for the purpose youre trying to achieve. As i said before, there’s no way you’re going to accomplish enough charging DURING the race to worry much about imbalance in the pack, and any imbalance created by the differing capacities and wiring paths would be rectified by a perfectly normal full charge before and after. The batteries can transfer charge to each other faster than you can charge them, basically. If you hold the pack at full charge voltage until it stops accepting much current, the batteries will ‘self-balance’ between each other, and internally their BMS’s will balance between their internal cells.