The current is still flowing even with the breakers completely removed but less then 1 amp so it leads me to believe that the hybrid unit is pushing it between the ground and line connection.If N-G are properly bonded and there is a ground fault, it should trip a breaker.
It appears you only have 2 breakers so it should not be hard to chase. I did post how to troubleshoot this here. Break the system down into smaller sections and determine where the problem is located.
Post up a wiring diagram if you can.